Resources
Tools, data, and cores we use
A curated set of links for new lab members and anyone getting started in single-cell genomics, with an emphasis on open AI models and tools you can run yourself.
AI models for biology
- AlphaFold 3 Server (protein and complex structure)
- AlphaFold Protein Structure Database
- ESM (Evolutionary Scale Modeling, protein language models)
- Evo 2 (DNA foundation model, Arc Institute)
- Nucleotide Transformer (InstaDeep)
- scGPT (single-cell foundation model)
- Geneformer (single-cell transformer)
- Boltz (open biomolecular structure prediction)
- Hugging Face: biology and chemistry models